Spectrum CE System Developmental Validation for Fragment Analysis

Mary L. Loten, Margaret M. Ewing, John A. Picciano, Jon M. Drobac, Jessica J. Seifarth, Erica K. Graham, Lisa M. Misner, Robert S. McLaren, and Jonelle M. Thompson

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Editor´s Note

The developmental validation full report is now available- read the PDF version.

The Spectrum CE System is an automated 8-capillary electrophoresis instrument intended for separation and detection of fluorescently-labeled DNA fragments, including short tandem repeat (STR) markers. The CE instrument is compatible with existing five- and six-dye-labeled STR kits available from Promega and other commercial vendors. It is also compatible with the Promega 8-dye STR kits. The system supports automated analysis of up to four 96-well sample plates.

The developmental validation summary describes experiments performed on the Spectrum CE System following applicable standards and guidelines outlined in the FBI Quality Assurance Standards for Forensic DNA Testing Laboratories (1) and the Scientific Working Group on DNA Analysis Methods (SWGDAM) Validation Guidelines for DNA Analysis Methods (2).

The report describes the following characteristics of the Spectrum CE System:

  • Baseline noise and threshold evaluation
  • Precision, resolution, accuracy
  • Reproducibility
  • Sensitivity
  • Signal variability
  • Dye balance
  • Spectral artifact analysis
  • Contamination assessment
  • Mixture samples
  • Direct amplification

Up to six different STR chemistries were used in these validation studies (see table below). Three Spectrum CE Systems were used for each study, unless otherwise noted (System 1, 2, and 3). Spectrum Control Software (SCS) version 3.0.0 (8) was run on each system.

Manufacturer
PCR Chemistry
Manufacturer Part Number
Promega
PowerPlex® Fusion 6C System
DC2705, DC2720, DC2780
Promega
PowerPlex® ESI 17 Fast System
DC1720, DC1721
Promega
PowerPlex® Y23 System
DC2305, DC2320
Applied Biosystems
GlobalFiler™ IQC PCR Amplification Kit
A43565
Applied Biosystems
Yfiler™ Plus PCR Amplification Kit
4484678, 4482730
Applied Biosystems
AmpFLSTR™ NGM SElect™ PCR Amplification Kit
4457889

Table 1: PCR Chemistries Used in the Spectrum CE Instrument Developmental Validation.

References:

  • Federal Bureau of Investigation (2020). Quality Assurance Standards for Forensic DNA Testing Laboratories
  • Scientific Working Group on DNA Analysis Methods (2016). Validation Guidelines for DNA Analysis Methods

Want to learn more?

Check out the on demand webinar on the Spectrum CE Instrument DV and also get details about our 8-color PowerPlex® STR systems.

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