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First US Admissibility Hearing Using Next-Generation Sequencing Leading to the Conviction in a Double Homicide
Interview written and condensed by Mandi S. Van Buren, MS
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In the realm of forensic science, advancements in DNA analysis play a pivotal role in resolving criminal investigations. Among the latest innovations is the use of next-generation sequencing (NGS) and the integration of the MiSeq FGx system with the ForenSeq DNA Signature Prep kit, representing a significant leap forward in genetic profiling. This article explores the practical application of this technology in a recent double homicide case, shedding light on its effectiveness in forensic analysis.
Central to this advancement is the ForenSeq DNA Signature Prep kit, designed to amplify comprehensive genetic information from DNA samples using next-generation sequencing (NGS) technology. By examining autosomal short tandem repeats (STRs), Y-chromosomal STRs (YSTRs), and identity single nucleotide polymorphisms (iSNPs), this kit provides detailed genetic profiles with high accuracy.
In a notable case in Kern County, California, the efficacy of this technology was put to the test during an admissibility hearing. Forensic experts presented the scientific basis of NGS technology, outlining its applications and limitations. Following this rigorous evaluation, the data derived from the MiSeq FGx system and ForenSeq DNA Signature Prep kit was deemed admissible in court. During the trial, forensic scientists utilized this advanced technology to analyze evidence from the crime scene. Comparative analyses of autosomal STRs, YSTRs, and iSNPs provided valuable insights into the genetic composition of the samples, aiding in the identification of individuals involved.
Ultimately, the use of NGS technology proved instrumental in securing a conviction in the double homicide case. The comprehensive genetic profiles generated by the MiSeq FGx system and ForenSeq DNA Signature prep kit provided compelling evidence, leading to a successful outcome in court. This case exemplifies the practical benefits of next-generation sequencing in forensic DNA analysis, highlighting its role in enhancing the accuracy and reliability of criminal investigations. As technology continues to advance, the potential for further improvements in forensic science remains promising.
Mandi Van Buren, former DNA Technical Lead at the Kern Regional Crime and current DNA analyst with DNA Labs International, shares her experiences and insight into this process and how she prepared for the admissibility hearing and trial.
Tell us a little about your background
I have a master’s degree from the University of Florida in Pharmacy with a concentration in forensic drug chemistry and a Bachelor of Science degree from the University of Tampa in biology. My initial career path from a young age was to go to medical school and be a doctor but something in me was pulling me also towards law enforcement. While in my first year of graduate school in a PhD program I heard a speaker from the FBI discussing forensic science and DNA as it applied in her case. That speaker changed my path immediately and I knew then I wanted to be in the forensic science field. I began my career in forensics over 15 years ago at the Utah Bureau of Forensic Services. I worked as a Senior Forensic Scientist primarily in the DNA Unit and cross trained in the controlled substance unit and crime scene response team for over 7 years. I then relocated to California and worked for the Tulare County Sheriff Office as the first civilian Field Evidence Technician with their department focusing on crime scene response. In 2016, I started with the Kern Regional Crime Lab and moved through the ranks until ultimately being promoted to the DNA Technical Lead in 2019. Currently I am working for DNA Labs International as a DNA analyst.
What kind of cases does the Kern Regional Crime Lab process?
The Kern Regional Crime Laboratory is a full-service laboratory offering an expansive number of forensic services to the law enforcement community. The laboratory serves over 40 agencies across Kern County including local police agencies, numerous prisons, and the local school district. The DNA analysis unit specifically conducts serological testing for body fluid identification, DNA analysis, kinship for criminal paternity cases, familial searching, CODIS, and a complete local database for generation of investigative leads. On average, the DNA unit receives 700 requests for service annually and completes testing of over 2,500 DNA samples. Case submissions are approved for all types of cases including felonies and misdemeanors from homicides and sexual assaults to property crimes. In addition to current casework, the DNA unit received many requests for analysis of evidence related to cold case homicides and sexual assaults.
What were the major challenges the lab faced that led you to implement NGS for casework?
During the initial considerations of adopting NGS technology, the laboratory was operating with an out-of-date genetic analyzer, limited resources, and an increase of more complex DNA profiles for interpretation with the allowance for touch DNA samples to be submitted for testing. Additionally, the laboratory had Y-STR testing available but, due to the workflow being used, not all evidence items had enough sample available to test both autosomal STRs and Y-STRs, even if the sample was deemed suitable for Y-STR testing.
In 2018, the MiSeq FGx instrument and the ForenSeq DNA Signature Prep kit had been approved by NDIS for use on forensic samples. Since the DNA unit relies primarily on grant funds for equipment and reagents, this approval allowed the lab to use its grant funding to purchase the MiSeq FGx workflow with ForenSeq DNA Signature Prep. We believed the system would alleviate some of our challenges and streamline our current workflow by providing aSTR and Y-STR genetic information in a single amplification reducing analyst time in the lab. Additionally, we hoped for improved mixture deconvolution with the identification of isoalleles with NGS. We utilized probabilistic genotyping for all mixture interpretation for our CE workflow and often an analyst would struggle estimating the number of contributors in a complex mixture. The additional aSTR markers, combined with the availability of Y-STR data, SNP data, and identification of isoalleles would provide analysts with more information to accurately estimate the number of contributors during interpretation.
Which NGS products did you bring on board and why?
We validated the MiSeq FGx system with the ForenSeq DNA Signature Prep kit. Our validation focused on both primer sets A and B. We had researched different NGS instruments and kits but we felt this combination was best suited for our needs, could be easily integrated into our current workflow, and would work with our existing Hamilton liquid handling robots. At the time this project started, this was the only NDIS approved kit and instrument which we needed in order to utilize grant funds to fund the project.
Did you have any concerns about bringing on something so different?
As with any new technology or instrument, there are always going to be concerns. The decision to implement NGS, I think, came with even more concerns because at that time, no other forensic crime lab had successfully implemented this instrument and testing kit for evidence samples. In addition, we were bringing this technology online with the plan to eventually replace and phase out CE technology in our lab completely. We didn’t know what support we would have from all involved stakeholders including lab management, law enforcement customers, the DA’s office, and technical support from vendors. As the project continued, other considerations arose including data storage and cost, training, and implementation strategy. I was a newly appointed DNA technical lead and was handed this project when the unit was understaffed and dealing with a backlog of cases. I knew my team would not be welcoming this change with open arms as all change slows down the process, adds additional training obligations, and would require more from everyone when our plates were already full.
However, my experiences through this process from validation, implementation, and the admissibility hearing have made me a true supporter of this technology. The amount of knowledge and support we gained overshadowed the initial concerns. By having to face these challenges, I was forced to find answers or troubleshoot issues directly with vendors. I gained more technical knowledge through this validation than any other project I have worked on.
How did you decide which first cases would use NGS?
NGS was initially validated to be used on all casework samples, including evidence and known reference items. During implementation, the plan shifted to samples from violent crime cases only. The workflow would be to evaluate samples at quantification and then decide if a whether to use primer set A or B. Some considerations for this decision included how much sample did we have, did we consume the item, is there any potential subjects or are they unknown.
The first 10 cases utilizing NGS were violent crime cases and focused on samples originating from biological fluids. Our interpretation protocol states that all mixtures must be interpreted with probabilistic genotyping software, so our NGS testing was limited until the completion of additional validation projects. Once NGS and probabilistic genotyping validations are fully implemented, all samples of any case type would be acceptable for NGS.
Your lab was a part of the first accepted admissibility hearing for NGS. Can you tell us more about that?
The case was a double homicide in Dec 2023. We selected this case because it had additional evidence available from biological fluids (blood) that we suspected would be single source and therefore interpretable with NGS. We tested samples first with CE and then an additional set of samples with NGS and presented the aSTRs, YSTRs and iSNPS with statistics in court. Using the iSNPs was a big deal because this was the first time SNP to SNP comparisons were presented for identification in a criminal court case.
We had a team of experts present at the admissibility hearing; Bruce Budowle laid the foundation of the science and the evolution of DNA testing; Meredith Turnbough covered the details of the MiSeq FGx and ForenSeq DNA Signature Prep Kit and what happens at a molecular level; I covered the validation data and procedures developed in the lab; Brooke Ramirez presented the data and results from the case evidence. The admissibility was successful, and the accused was convicted of two counts of murder.
What advice or recommendation would you give other labs?
- Develop a core team early in the project that includes analysts, stakeholders, vendors, and outside experts as needed
- Gain buy-in early from your team and management. This project takes time and time away from cases, so everyone needs to be understanding
- Know the benefits upfront and use those to sell the project to your leadership and team members
- Look at ALL the applications. So many people are only focusing on forensic investigative genetic genealogy (FIGG) but this can be used in your everyday casework as well. This is especially important if you want to use grant funding to fund the project.
- Do the validation yourself or choose a hybrid method with the vendor; I would not recommend having someone else do the whole validation. Though time consuming and challenging, this is where your understanding of the system, kit, and process will grow deeper to help you mentor and train others and help you present this in court.
- Reach out to others that have completed this. Do not reinvent the wheel or get stuck and think there is no one to help-there is!
What would you say to other labs considering validating and implementing NGS for HID casework?
Do it now and stop waiting! There is a strong support system in this field with experts on hand waiting and wanting to help. I believe this technology improves our current testing capabilities and can provide more investigative information to solve more cases faster. I believe all crime labs can benefit from implementing NGS in some fashion. There are numerous applications and ways to integrate it into a lab’s current workflow. The process will still be overwhelming at times and you will still face challenges, but there is light at the end of the tunnel and now a clear path to follow from beginning to end.
Mandi will be presenting on this groundbreaking case during the General Session at ISHI this year, offering deeper insights into the process and its implications for the future of forensic science.